Publications

• 1. Ushakumary MG
  2. Feng S
  3. Bandyopadhyay G
  4. Olson H
  5. Weitz KK
  6. Huyck HL
  7. Poole C
  8. Purkerson JM
  9. Bhattacharya S
  10. Ljungberg MC
  11. Mariani TJ
  12. Deutsch GH
  13. Misra RS
  14. Carson JP
  15. Adkins JN
  16. Pryhuber GS
  17. Clair G
  Cell Population-resolved Multi-Omics Atlas of the Developing Lung.; American journal of respiratory cell and molecular biology. 2024 Oct 24.
• 1. Bender W
  2. Zhang Y
  3. Corbett A
  4. Chu C
  5. Grier A
  6. Wang L
  7. Qiu X
  8. McCall MN
  9. Topham DJ
  10. Walsh EE
  11. Mariani TJ
  12. Scheuermann R
  13. Caserta MT
  14. Anderson CS
  Association of disease severity and genetic variation during primary Respiratory Syncytial Virus infections.; BMC medical genomics; Vol 17(1), pp. 165. 2024 Jun 19.
• 1. Bandyopadhyay G
  2. Jehrio MG
  3. Baker C
  4. Bhattacharya S
  5. Misra RS
  6. Huyck HL
  7. Chu CY
  8. Myers JR
  9. Ashton J
  10. Polter S
  11. Cochran M
  12. Bushnell T
  13. Dutra J
  14. Katzman PJ
  15. Deutsch GH
  16. Mariani TJ
  17. Pryhuber GS
  Bulk RNA Sequencing of Human Pediatric Lung Cell Populations Reveals Unique Transcriptomic Signature Associated with Post-natal Pulmonary Development.; American journal of physiology. Lung cellular and molecular physiology. 2024 Mar 05.
• 1. Bhattacharya S
  2. Myers JA
  3. Baker C
  4. Guo M
  5. Danopoulos S
  6. Myers JR
  7. Bandyopadhyay G
  8. Romas ST
  9. Huyck HL
  10. Misra RS
  11. Dutra J
  12. Holden-Wiltse J
  13. McDavid AN
  14. Ashton JM
  15. Al Alam D
  16. Potter SS
  17. Whitsett JA
  18. Xu Y
  19. Pryhuber GS
  20. Mariani TJ
  Single-Cell Transcriptomic Profiling Identifies Molecular Phenotypes of Newborn Human Lung Cells.; Genes; Vol 15(3). 2024 Feb 26.
• 1. Moore BB
  2. Ballinger MN
  3. Bauer NN
  4. Blackwell TS
  5. Borok Z
  6. Budinger GRS
  7. Camoretti-Mercado B
  8. Erzurum SC
  9. Himes BE
  10. Keshamouni VG
  11. Kulkarni HS
  12. Mallampalli RK
  13. Mariani TJ
  14. Martinez FJ
  15. McCombs JE
  16. Newcomb DC
  17. Johnston RA
  18. O'Reilly MA
  19. Prakash YS
  20. Ridge KM
  21. Sime PJ
  22. Sperling AI
  23. Violette S
  24. Wilkes DS
  25. Königshoff M
  Building Career Paths for Ph.D., Basic and Translational Scientists in Clinical Departments in the United States: An Official American Thoracic Society Workshop Report.; Annals of the American Thoracic Society; Vol 20(8), pp. 1077-1087. 2023 Aug.
• 1. Dylag AM
  2. Misra RS
  3. Bandyopadhyay G
  4. Poole C
  5. Huyck HL
  6. Jehrio MG
  7. Haak J
  8. Deutsch GH
  9. Dvorak C
  10. Olson HM
  11. Paurus V
  12. Katzman P
  13. Woo J
  14. Purkerson JM
  15. Adkins JN
  16. Mariani TJ
  17. Clair GC
  18. Pryhuber GS
  New Insights into the Natural History of Bronchopulmonary Dysplasia from Proteomics and Multiplexed Immunohistochemistry.; American journal of physiology. Lung cellular and molecular physiology. 2023 Jul 25.
• 1. Zhou T
  2. Gilliam NJ
  3. Li S
  4. Spandau S
  5. Osborn RM
  6. Connor S
  7. Anderson CS
  8. Mariani TJ
  9. Thakar J
  10. Dewhurst S
  11. Mathews DH
  12. Huang L
  13. Sun Y
  Generation and Functional Analysis of Defective Viral Genomes during SARS-CoV-2 Infection.; mBio. 2023 Apr 19.
• 1. Bhattacharya S
  2. Cherry C
  3. Deutsch G
  4. Glass IA
  5. Mariani TJ
  6. Alam DA
  7. Danopoulos S
  A Trisomy 21 Lung Cell Atlas.; bioRxiv : the preprint server for biology. 2023 Apr 03.
• 1. Osborn RM
  2. Leach J
  3. Zanche M
  4. Ashton JM
  5. Chu C
  6. Thakar J
  7. Dewhurst S
  8. Rosenberger S
  9. Pavelka M
  10. Pryhuber GS
  11. Mariani TJ
  12. Anderson CS
  Preparation of noninfectious scRNAseq samples from SARS-CoV-2-infected epithelial cells.; PloS one; Vol 18(2), pp. e0281898. 2023 Feb 24.
• 1. Chu CY
  2. Kim SY
  3. Pryhuber GS
  4. Mariani TJ
  5. McGraw MD
  Single Cell Resolution of Human Airway Epithelial Cells Exposed to Bronchiolitis Obliterans - Associated Chemicals.; American journal of physiology. Lung cellular and molecular physiology. 2023 Jan 12.
• 1. Wang S
  2. Zhu G
  3. Jiang D
  4. Rhen J
  5. Li X
  6. Liu H
  7. Lyu Y
  8. Tsai P
  9. Rose Y
  10. Nguyen T
  11. White RJ
  12. Pryhuber GS
  13. Mariani TJ
  14. Li C
  15. Mohan A
  16. Xu Y
  17. Pang J
  Reduced Notch1 Cleavage Promotes the Development of Pulmonary Hypertension.; Hypertension; Vol 79(1), pp. 79-92. 2022 Jan 01.
• 1. Yu J
  2. Tycksen E
  3. Yang W
  4. Mariani TJ
  5. Bhattacharya S
  6. Falsey AR
  7. Topham DJ
  8. Storch GA
  Use of Host Response to Refine the Diagnosis of Group A Streptococcal Pharyngitis.; Journal of the Pediatric Infectious Diseases Society. 2022 Sep 25.
• 1. Zhou T
  2. Gilliam NJ
  3. Li S
  4. Spaudau S
  5. Osborn RM
  6. Anderson CS
  7. Mariani TJ
  8. Thakar J
  9. Dewhurst S
  10. Mathews DH
  11. Huang L
  12. Sun Y
  Generation and functional analysis of defective viral genomes during SARS-CoV-2 infection.; bioRxiv : the preprint server for biology. 2022 Sep 23.
• 1. McCall MN
  2. Chu CY
  3. Wang L
  4. Benoodt L
  5. Thakar J
  6. Corbett A
  7. Holden-Wiltse J
  8. Slaunwhite C
  9. Grier A
  10. Gill SR
  11. Falsey AR
  12. Topham DJ
  13. Caserta MT
  14. Walsh EE
  15. Qiu X
  16. Mariani TJ
  A systems genomics approach uncovers molecular associates of RSV severity.; PLoS computational biology; Vol 17(12). 2021 Dec 28.
• 1. Peterson DR
  2. Baran AM
  3. Bhattacharya S
  4. Branche AR
  5. Croft DP
  6. Corbett AM
  7. Walsh EE
  8. Falsey AR
  9. Mariani TJ
  Gene Expression Risk Scores for COVID-19 Illness Severity.; The Journal of infectious diseases. 2021 Nov 30.
• 1. Clair G
  2. Bramer LM
  3. Misra R
  4. McGraw MD
  5. Bhattacharya S
  6. Kitzmiller JA
  7. Feng S
  8. Danna VG
  9. Bandyopadhyay G
  10. Bhotika H
  11. Huyck HL
  12. Deutsch GH
  13. Mariani TJ
  14. Carson J
  15. Whitsett JA
  16. Pryhuber GS
  17. Adkins JN
  18. Ansong C
  Proteomic Analysis of Human Lung Development.; American journal of respiratory and critical care medicine. 2021 Nov 09.
• 1. Wang S
  2. Zhu G
  3. Jiang D
  4. Rhen J
  5. Li X
  6. Liu H
  7. Lyu Y
  8. Tsai P
  9. Rose Y
  10. Nguyen T
  11. White RJ
  12. Pryhuber GS
  13. Mariani TJ
  14. Li C
  15. Mohan A
  16. Xu Y
  17. Pang J
  Reduced Notch1 Cleavage Promotes the Development of Pulmonary Hypertension.; Hypertension (Dallas, Tex. : 1979). 2021 Nov 05.
• 1. Croft DP
  2. Burton DS
  3. Nagel DJ
  4. Bhattacharya S
  5. Falsey AR
  6. Georas SN
  7. Hopke PK
  8. Johnston CJ
  9. Kottmann RM
  10. Litonjua AA
  11. Mariani TJ
  12. Rich DQ
  13. Thevenet-Morrison K
  14. Thurston SW
  15. Utell MJ
  16. McCall MN
  The effect of air pollution on the transcriptomics of the immune response to respiratory infection.; Scientific reports; Vol 11(1). 2021 Sep 30.
• 1. Danopoulos S
  2. Deutsch GH
  3. Dumortier C
  4. Mariani TJ
  5. Al Alam D
  Lung disease manifestations in Down Syndrome.; American journal of physiology. Lung cellular and molecular physiology. 2021 Sep 01.
• 1. Peterson DR
  2. Baran AM
  3. Bhattacharya S
  4. Branche AR
  5. Croft DP
  6. Corbett AM
  7. Walsh EE
  8. Falsey AR
  9. Mariani TJ
  Gene Expression Risk Scores for COVID-19 Illness Severity.; bioRxiv : the preprint server for biology. 2021 Aug 24.
• 1. Mereness JA
  2. Mariani TJ
  The critical role of collagen VI in lung development and chronic lung disease.; Matrix biology plus; Vol 10. 2021 Jun.
• 1. Danopoulos S
  2. Bhattacharya S
  3. Deutsch G
  4. Nih LR
  5. Slaunwhite C
  6. Mariani TJ
  7. Al Alam D
  Prenatal histological, cellular, and molecular anomalies in Trisomy 21 lung.; The Journal of pathology. 2021 May 29.
• 1. Wang J
  2. Kim SY
  3. House E
  4. Olson HM
  5. Johnston CJ
  6. Chalupa D
  7. Hernady E
  8. Mariani TJ
  9. Clair G
  10. Ansong C
  11. Qian WJ
  12. Finkelstein JN
  13. McGraw MD
  Repetitive diacetyl vapor exposure promotes ubiquitin proteasome stress and precedes bronchiolitis obliterans pathology.; Archives of toxicology. 2021 May 24.
• 1. Meng Y
  2. Groth SW
  3. Hodgkinson CA
  4. Mariani TJ
  Serotonin system genes contribute to the susceptibility to obesity in Black adolescents.; Obesity science & practice; Vol 7(4), pp. 441-449. 2021 Mar 27.
• 1. Anderson CS
  2. Chirkova T
  3. Slaunwhite CG
  4. Qiu X
  5. Walsh EE
  6. Anderson LJ
  7. Mariani TJ
  CX3CR1 Engagement by Respiratory Syncytial Virus Leads to Induction of Nucleolin and Dysregulation of Cilia-related Genes.; Journal of virology. 2021 Mar 17.
• 1. Muus C
  2. Luecken MD
  3. Eraslan G
  4. Sikkema L
  5. Waghray A
  6. Heimberg G
  7. Kobayashi Y
  8. Vaishnav ED
  9. Subramanian A
  10. Smillie C
  11. Jagadeesh KA
  12. Duong ET
  13. Fiskin E
  14. Triglia ET
  15. Ansari M
  16. Cai P
  17. Lin B
  18. Buchanan J
  19. Chen S
  20. Shu J
  21. Haber AL
  22. Chung H
  23. Montoro DT
  24. Adams T
  25. Aliee H
  26. Allon SJ
  27. Andrusivova Z
  28. Angelidis I
  29. Ashenberg O
  30. Bassler K
  31. Bécavin C
  32. Benhar I
  33. Bergenstråhle J
  34. Bergenstråhle L
  35. Bolt L
  36. Braun E
  37. Bui LT
  38. Callori S
  39. Chaffin M
  40. Chichelnitskiy E
  41. Chiou J
  42. Conlon TM
  43. Cuoco MS
  44. Cuomo ASE
  45. Deprez M
  46. Duclos G
  47. Fine D
  48. Fischer DS
  49. Ghazanfar S
  50. Gillich A
  51. Giotti B
  52. Gould J
  53. Guo M
  54. Gutierrez AJ
  55. Habermann AC
  56. Harvey T
  57. He P
  58. Hou X
  59. Hu L
  60. Hu Y
  61. Jaiswal A
  62. Ji L
  63. Jiang P
  64. Kapellos TS
  65. Kuo CS
  66. Larsson L
  67. Leney-Greene MA
  68. Lim K
  69. Litviňuková M
  70. Ludwig LS
  71. Lukassen S
  72. Luo W
  73. Maatz H
  74. Madissoon E
  75. Mamanova L
  76. Manakongtreecheep K
  77. Leroy S
  78. Mayr CH
  79. Mbano IM
  80. McAdams AM
  81. Nabhan AN
  82. Nyquist SK
  83. Penland L
  84. Poirion OB
  85. Poli S
  86. Qi C
  87. Queen R
  88. Reichart D
  89. Rosas I
  90. Schupp JC
  91. Shea CV
  92. Shi X
  93. Sinha R
  94. Sit RV
  95. Slowikowski K
  96. Slyper M
  97. Smith NP
  98. Sountoulidis A
  99. Strunz M
  100. Sullivan TB
  101. Sun D
  102. Talavera-López C
  103. Tan P
  104. Tantivit J
  105. Travaglini KJ
  106. Tucker NR
  107. Vernon KA
  108. Wadsworth MH
  109. Waldman J
  110. Wang X
  111. Xu K
  112. Yan W
  113. Zhao W
  114. Ziegler CGK
  Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics.; Nature medicine. 2021 Mar 02.
• 1. Wang L
  2. Chu CY
  3. McCall MN
  4. Slaunwhite C
  5. Holden-Wiltse J
  6. Corbett A
  7. Falsey AR
  8. Topham DJ
  9. Caserta MT
  10. Mariani TJ
  11. Walsh EE
  12. Qiu X
  Airway gene-expression classifiers for respiratory syncytial virus (RSV) disease severity in infants.; BMC medical genomics; Vol 14(1). 2021 Feb 25.
• 1. Al Alam D
  2. Ballard PL
  3. Jourdan Le Saux C
  4. Ingram JL
  5. Mariani TJ
  6. Moore NS
  7. Weiss DJ
  8. Yu M
  Human Fetal Tissue Regulation. Impact on Pediatric and Adult Respiratory-related Research.; Annals of the American Thoracic Society; Vol 18(2). 2021 Feb.
• 1. Grier A
  2. Gill AL
  3. Kessler HA
  4. Corbett A
  5. Bandyopadhyay S
  6. Java J
  7. Holden-Wiltse J
  8. Falsey AR
  9. Topham DJ
  10. Mariani TJ
  11. Caserta MT
  12. Walsh EE
  13. Gill SR
  Temporal Dysbiosis of Infant Nasal Microbiota Relative to Respiratory Syncytial Virus Infection.; The Journal of infectious diseases. 2020 Sep 14.
• 1. Chu CY
  2. Qiu X
  3. McCall MN
  4. Wang L
  5. Corbett A
  6. Holden-Wiltse J
  7. Slaunwhite C
  8. Grier A
  9. Gill SR
  10. Pryhuber GS
  11. Falsey AR
  12. Topham DJ
  13. Caserta MT
  14. Walsh EE
  15. Mariani TJ
  Airway gene expression correlates of RSV disease severity and microbiome composition in infants.; The Journal of infectious diseases. 2020 Sep 14.
• 1. Thakar J
  2. Qian Y
  3. Benoodt L
  4. Roumanes D
  5. Qiu X
  6. Laniewski N
  7. Chu C
  8. Slaunwhite C
  9. Wang L
  10. Mandava A
  11. Chang I
  12. Falsey AR
  13. Caserta MT
  14. Mariani TJ
  15. Scheuermann RH
  16. Walsh EE
  17. Topham DJ
  Unbiased analysis of peripheral blood mononuclear cells reveals CD4 T cell response to RSV matrix protein.; Vaccine: X; Vol 5. 2020 Aug 07.
• 1. Anderson CS
  2. Sangster MY
  3. Yang H
  4. Mariani TJ
  5. Chaudhury S
  6. Topham DJ
  Implementing sequence-based antigenic distance calculation into immunological shape space model.; BMC bioinformatics; Vol 21(1). 2020 Jun 19.
• 1. McGraw MD
  2. Kim SY
  3. Reed C
  4. Hernady E
  5. Rahman I
  6. Mariani TJ
  7. Finkelstein JN
  Airway basal cell injury after acute diacetyl (2,3-butanedione) vapor exposure.; Toxicology letters; Vol 325. 2020 Jun 01.
• 1. Ren Y
  2. Lyu Y
  3. Mereness JA
  4. Wang S
  5. Pang J
  6. Mariani TJ
  Rare Pulmonary Connective Tissue Type Mast Cells Regulate Lung Endothelial Cell Angiogenesis.; The American journal of pathology. 2020 May 22.
• 1. Bhattacharya S
  2. Mereness JA
  3. Baran AM
  4. Misra RS
  5. Peterson DR
  6. Ryan RM
  7. Reynolds AM
  8. Pryhuber GS
  9. Mariani TJ
  Lymphocyte-Specific Biomarkers Associated With Preterm Birth and Bronchopulmonary Dysplasia.; Frontiers in immunology; Vol 11. 2020.
• 1. Mereness JA
  2. Bhattacharya S
  3. Ren Y
  4. Wang Q
  5. Anderson CS
  6. Donlon K
  7. Dylag AM
  8. Haak J
  9. Angelin A
  10. Bonaldo P
  11. Mariani T
  Collagen VI Deficiency Results in Structural Abnormalities in the Mouse Lung.; The American journal of pathology. 2019 Dec 12.
• 1. Anderson CS
  2. Chu CY
  3. Wang Q
  4. Mereness JA
  5. Ren Y
  6. Donlon K
  7. Bhattacharya S
  8. Misra RS
  9. Walsh EE
  10. Pryhuber GS
  11. Mariani TJ
  CX3CR1 as a respiratory syncytial virus receptor in pediatric human lung.; Pediatric research. 2019 Nov 14.
• 1. Danopoulos S
  2. Bhattacharya S
  3. Mariani TJ
  4. Al Alam D
  Transcriptional Characterisation of Human Lung Cells Identifies Novel Mesenchymal Lineage Markers.; The European respiratory journal. 2019 Oct 16.
• 1. Sonawane AR
  2. Tian L
  3. Chu CY
  4. Qiu X
  5. Wang L
  6. Holden-Wiltse J
  7. Grier A
  8. Gill SR
  9. Caserta MT
  10. Falsey AR
  11. Topham DJ
  12. Walsh EE
  13. Mariani TJ
  14. Weiss ST
  15. Silverman EK
  16. Glass K
  17. Liu YY
  Microbiome-Transcriptome Interactions Related to Severity of Respiratory Syncytial Virus Infection.; Scientific reports; Vol 9(1). 2019 Sep 25.
• 1. Ha B
  2. Chirkova T
  3. Boukhvalova MS
  4. Sun HY
  5. Walsh EE
  6. Anderson CS
  7. Mariani TJ
  8. Anderson LJ
  Mutation of Respiratory Syncytial Virus G Protein's CX3C Motif Attenuates Infection in Cotton Rats and Primary Human Airway Epithelial Cells.; Vaccines; Vol 7(3). 2019 Jul 19.
• 1. Du Y
  2. Clair GC
  3. Al Alam D
  4. Danopoulos S
  5. Schnell D
  6. Kitzmiller JA
  7. Misra RS
  8. Bhattacharya S
  9. Warburton D
  10. Mariani TJ
  11. Pryhuber GS
  12. Whitsett JA
  13. Ansong C
  14. Xu Y
  Integration of transcriptomic and proteomic data identifies biological functions in cell populations from human infant lung.; American journal of physiology. Lung cellular and molecular physiology. 2019 Jul 03.
• 1. Walsh EE
  2. Mariani TJ
  3. Chu C
  4. Grier A
  5. Gill SR
  6. Qiu X
  7. Wang L
  8. Holden-Wiltse J
  9. Corbett A
  10. Thakar J
  11. Benoodt L
  12. McCall MN
  13. Topham DJ
  14. Falsey AR
  15. Caserta MT
  Aims, Study Design, and Enrollment Results From the Assessing Predictors of Infant Respiratory Syncytial Virus Effects and Severity Study.; JMIR research protocols; Vol 8(6). 2019 Jun 06.
• 1. Wang Q
  2. Bhattacharya S
  3. Mereness JA
  4. Anderson C
  5. Lillis JA
  6. Misra RS
  7. Romas S
  8. Huyck H
  9. Howell A
  10. Bandyopadhyay G
  11. Donlon K
  12. Myers JR
  13. Ashton J
  14. Pryhuber GS
  15. Mariani TJ
  A novel in vitro model of primary human pediatric lung epithelial cells.; Pediatric research. 2019 Feb 18.
• 1. Pan H
  2. Deutsch GH
  3. Wert SE
  Comprehensive anatomic ontologies for lung development: A comparison of alveolar formation and maturation within mouse and human lung.; Journal of biomedical semantics; Vol 10(1). 2019 Jan 24.
• 1. Ryan RM
  2. Feng R
  3. Bazacliu C
  4. Ferkol TW
  5. Ren CL
  6. Mariani TJ
  7. Poindexter BB
  8. Wang F
  9. Moore PE
  Black Race Is Associated with a Lower Risk of Bronchopulmonary Dysplasia.; The Journal of pediatrics. 2019 Jan 04.
• 1. Hamvas A
  2. Feng R
  3. Bi Y
  4. Wang F
  5. Bhattacharya S
  6. Mereness J
  7. Kaushal M
  8. Cotten CM
  9. Ballard PL
  10. Mariani TJ
  Exome sequencing identifies gene variants and networks associated with extreme respiratory outcomes following preterm birth.; BMC genetics; Vol 19(1). 2018 Oct 20.
• 1. Yu J
  2. Peterson DR
  3. Baran AM
  4. Bhattacharya S
  5. Wylie TN
  6. Falsey AR
  7. Mariani TJ
  8. Storch GA
  Host Gene Expression in Nose and Blood for the Diagnosis of Viral Respiratory Infection.; The Journal of infectious diseases. 2018 Oct 18.
• 1. Kyle JE
  2. Clair G
  3. Bandyopadhyay G
  4. Misra RS
  5. Zink EM
  6. Bloodsworth KJ
  7. Shukla AK
  8. Du Y
  9. Lillis J
  10. Myers JR
  11. Ashton J
  12. Bushnell T
  13. Cochran M
  14. Deutsch G
  15. Baker ES
  16. Carson JP
  17. Mariani TJ
  18. Xu Y
  19. Whitsett JA
  20. Pryhuber G
  21. Ansong C
  Cell type-resolved human lung lipidome reveals cellular cooperation in lung function.; Scientific reports; Vol 8(1). 2018 Sep 07.
• 1. Bandyopadhyay G
  2. Huyck HL
  3. Misra RS
  4. Bhattacharya S
  5. Wang Q
  6. Mereness J
  7. Lillis JA
  8. Myers JR
  9. Ashton J
  10. Bushnell T
  11. Cochran M
  12. Holden-Wiltse J
  13. Katzman P
  14. Deutsch GH
  15. Whitsett JA
  16. Xu Y
  17. Mariani TJ
  18. Pryhuber GS
  Dissociation, Cellular Isolation and Initial Molecular Characterization of Neonatal and Pediatric Human Lung Tissues.; American journal of physiology. Lung cellular and molecular physiology. 2018 Jul 05.
• 1. Walsh EE
  2. Wang L
  3. Falsey AR
  4. Qiu X
  5. Corbett A
  6. Holden-Wiltse J
  7. Mariani TJ
  8. Topham DJ
  9. Caserta MT
  Virus-Specific Antibody, Viral Load, and Disease Severity in Respiratory Syncytial Virus Infection.; The Journal of infectious diseases; Vol 218(2). 2018 Jun 20.
• 1. Scheible KM
  2. Emo J
  3. Laniewski N
  4. Baran AM
  5. Peterson DR
  6. Holden-Wiltse J
  7. Bandyopadhyay S
  8. Straw AG
  9. Huyck H
  10. Ashton JM
  11. Tripi KS
  12. Arul K
  13. Werner E
  14. Scalise T
  15. Maffett D
  16. Caserta M
  17. Ryan RM
  18. Reynolds AM
  19. Ren CL
  20. Topham DJ
  21. Mariani TJ
  22. Pryhuber GS
  T cell developmental arrest in former premature infants increases risk of respiratory morbidity later in infancy.; JCI insight; Vol 3(4). 2018 Feb 22.
• 1. Karnati S
  2. Oruqaj G
  3. Janga H
  4. Tumpara S
  5. Colasante C
  6. Van Veldhoven PP
  7. Braverman N
  8. Pilatz A
  9. Mariani TJ
  10. Baumgart-Vogt E
  PPARα-mediated peroxisome induction compensates PPARγ-deficiency in bronchiolar club cells.; PloS one; Vol 13(9). 2018.
• 1. Mereness JA
  2. Bhattacharya S
  3. Wang Q
  4. Ren Y
  5. Pryhuber GS
  6. Mariani TJ
  Type VI collagen promotes lung epithelial cell spreading and wound-closure.; PloS one; Vol 13(12). 2018.
• 1. Grier A
  2. Qiu X
  3. Bandyopadhyay S
  4. Holden-Wiltse J
  5. Kessler HA
  6. Gill AL
  7. Hamilton B
  8. Huyck H
  9. Misra S
  10. Mariani TJ
  11. Ryan RM
  12. Scholer L
  13. Scheible KM
  14. Lee YH
  15. Caserta MT
  16. Pryhuber GS
  17. Gill SR
  Impact of prematurity and nutrition on the developing gut microbiome and preterm infant growth.; Microbiome; Vol 5(1). 2017 Dec 11.
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  Dynamic changes in the CD4 T cell transcriptome are associated with disease severity during primary RSV infection in young infants.; The Journal of infectious diseases. 2017 Aug 17.
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  LungMAP: The Molecular Atlas of Lung Development Program.; American journal of physiology. Lung cellular and molecular physiology. 2017 Aug 10.
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  Transcriptomic Biomarkers to Discriminate Bacterial from Nonbacterial Infection in Adults Hospitalized with Respiratory Illness.; Scientific reports; Vol 7(1). 2017 Jul 26.
• 1. Solleti SK
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  3. Ahmad A
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  MicroRNA expression profiling defines the impact of electronic cigarettes on human airway epithelial cells.; Scientific reports; Vol 7(1). 2017 Apr 24.
• 1. Du Y
  2. Kitzmiller JA
  3. Sridharan A
  4. Perl AK
  5. Bridges JP
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  Lung Gene Expression Analysis (LGEA): an integrative web portal for comprehensive gene expression data analysis in lung development.; Thorax. 2017 Jan 09.
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  Flow-based sorting of neonatal lymphocyte populations for transcriptomics analysis.; Journal of immunological methods. 2016 Jul 18.
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  8. Weissmann N
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  Postnatal development of the bronchiolar club cells of distal airways in the mouse lung: stereological and molecular biological studies.; Cell and tissue research; Vol 364(3). 2016 Jun.
• 1. Yee M
  2. Gelein R
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  5. O'Reilly MA
  The Oxygen Environment at Birth Specifies the Population of Alveolar Epithelial Stem Cells in the Adult Lung.; Stem cells (Dayton, Ohio); Vol 34(5). 2016 May.
• 1. Solleti SK
  2. Srisuma S
  3. Bhattacharya S
  4. Rangel-Moreno J
  5. Bijli KM
  6. Randall TD
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  Serpine2 deficiency results in lung lymphocyte accumulation and bronchus-associated lymphoid tissue formation.; FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 2016 Apr 8.
• 1. Mariani TJ
  Respiratory disorders: Ironing out smoking-related airway disease.; Nature; Vol 531(7596). 2016 Mar 31.
• 1. Ahmad A
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  Recurrent copy number variants associated with bronchopulmonary dysplasia.; Pediatric research. 2016 Mar 14.
• 1. Chu CY
  2. Qiu X
  3. Wang L
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  5. Lofthus G
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  The Healthy Infant Nasal Transcriptome: A Benchmark Study.; Scientific reports; Vol 6. 2016.
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  Update on Molecular Biology of Lung Development--Transcriptomics.; Clinics in perinatology; Vol 42(4). 2015 Dec.
• 1. Scheible KM
  2. Emo J
  3. Yang H
  4. Holden-Wiltse J
  5. Straw A
  6. Huyck H
  7. Misra S
  8. Topham DJ
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  Developmentally determined reduction in CD31 during gestation is associated with CD8+ T cell effector differentiation in preterm infants.; Clinical immunology (Orlando, Fla.); Vol 161(2). 2015 Dec.
• 1. Legoux FP
  2. Lim JB
  3. Cauley AW
  4. Dikiy S
  5. Ertelt J
  6. Mariani TJ
  7. Sparwasser T
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  CD4+ T Cell Tolerance to Tissue-Restricted Self Antigens Is Mediated by Antigen-Specific Regulatory T Cells Rather Than Deletion.; Immunity; Vol 43(5). 2015 Nov 17.
• 1. Solleti SK
  2. Simon DM
  3. Srisuma S
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  6. Rangasamy T
  7. Bijli KM
  8. Rahman A
  9. Crossno JT
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  Airway epithelial cell PPARγ modulates cigarette smoke-induced chemokine expression and emphysema susceptibility in mice.; American journal of physiology. Lung cellular and molecular physiology; Vol 309(3). 2015 Aug 1.
• 1. Cuna A
  2. Halloran B
  3. Faye-Petersen O
  4. Kelly D
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  6. Cui X
  7. Pandit K
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  Alterations in gene expression and DNA methylation during murine and human lung alveolar septation.; American journal of respiratory cell and molecular biology; Vol 53(1). 2015 Jul.
• 1. Misra R
  2. Shah S
  3. Fowell D
  4. Wang H
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  7. Huyck H
  8. Wyman C
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  12. Katzman PJ
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  Preterm cord blood CD4⁺ T cells exhibit increased IL-6 production in chorioamnionitis and decreased CD4⁺ T cells in bronchopulmonary dysplasia.; Human immunology; Vol 76(5). 2015 May.
• 1. Ambalavanan N
  2. Cotten CM
  3. Page GP
  4. Carlo WA
  5. Murray JC
  6. Bhattacharya S
  7. Mariani TJ
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  11. Higgins RD
  Integrated genomic analyses in bronchopulmonary dysplasia.; The Journal of pediatrics; Vol 166(3). 2015 Mar.
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  2. Maitre NL
  3. Ballard RA
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  6. Ellenberg JH
  7. Greenberg JM
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  11. Ren C
  12. Shaw P
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  Prematurity and respiratory outcomes program (PROP): study protocol of a prospective multicenter study of respiratory outcomes of preterm infants in the United States.; BMC pediatrics; Vol 15. 2015.
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  3. Yee M
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  8. Resseguie E
  9. Buczynski B
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  The genome-wide transcriptional response to neonatal hyperoxia identifies Ahr as a key regulator.; American journal of physiology. Lung cellular and molecular physiology; Vol 307(7). 2014 Oct 01.
• 1. Qiu W
  2. Rogers AJ
  3. Damask A
  4. Raby BA
  5. Klanderman BJ
  6. Duan QL
  7. Tyagi S
  8. Niu S
  9. Anderson C
  10. Cahir-Mcfarland E
  11. Mariani TJ
  12. Carey V
  13. Tantisira KG
  Pharmacogenomics: novel loci identification via integrating gene differential analysis and eQTL analysis.; Human molecular genetics; Vol 23(18). 2014 Sep 15.
• 1. Eckle T
  2. Brodsky K
  3. Bonney M
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  5. Han J
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  8. Kominsky DJ
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  HIF1A reduces acute lung injury by optimizing carbohydrate metabolism in the alveolar epithelium.; PLoS biology; Vol 11(9). 2013 Sep.
• 1. Mariani TJ
  2. Martinez F
  Chronic obstructive pulmonary disease genomics: yesterday, discovering population biomarkers; tomorrow, defining disease clusters.; American journal of respiratory and critical care medicine; Vol 187(9). 2013 May 1.
• 1. Bhattacharya S
  2. Mariani TJ
  Systems biology approaches to identify developmental bases for lung diseases.; Pediatric research; Vol 73(4 Pt 2). 2013 Apr.
• 1. Morrisey EE
  2. Cardoso WV
  3. Lane RH
  4. Rabinovitch M
  5. Abman SH
  6. Ai X
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  8. Bland RD
  9. Chapman HA
  10. Checkley W
  11. Epstein JA
  12. Kintner CR
  13. Kumar M
  14. Minoo P
  15. Mariani TJ
  16. McDonald DM
  17. Mukouyama YS
  18. Prince LS
  19. Reese J
  20. Rossant J
  21. Shi W
  22. Sun X
  23. Werb Z
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  Molecular determinants of lung development.; Annals of the American Thoracic Society; Vol 10(2). 2013 Apr.
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  Stability of T cell phenotype and functional assays following heparinized umbilical cord blood collection.; Cytometry. Part A : the journal of the International Society for Analytical Cytology; Vol 81(11). 2012 Nov.
• 1. Bhattacharya S
  2. Go D
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  11. Pryhuber GS
  Genome-wide transcriptional profiling reveals connective tissue mast cell accumulation in bronchopulmonary dysplasia.; American journal of respiratory and critical care medicine; Vol 186(4). 2012 Aug 15.
• 1. Brehm JM
  2. Hagiwara K
  3. Tesfaigzi Y
  4. Bruse S
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  11. Cho MH
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  18. Lomas DA
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  Identification of FGF7 as a novel susceptibility locus for chronic obstructive pulmonary disease.; Thorax; Vol 66(12). 2011 Dec.
• 1. Reddy NM
  2. Potteti HR
  3. Mariani TJ
  4. Biswal S
  5. Reddy SP
  Conditional deletion of Nrf2 in airway epithelium exacerbates acute lung injury and impairs the resolution of inflammation.; American journal of respiratory cell and molecular biology; Vol 45(6). 2011 Dec.
• 1. Himes BE
  2. Klanderman B
  3. Ziniti J
  4. Senter-Sylvia J
  5. Soto-Quiros ME
  6. Avila L
  7. Celedón JC
  8. Lange C
  9. Mariani TJ
  10. Lasky-Su J
  11. Hersh CP
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  13. Silverman EK
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  Association of SERPINE2 with asthma.; Chest; Vol 140(3). 2011 Sep.
• 1. Hersh CP
  2. Silverman EK
  3. Gascon J
  4. Bhattacharya S
  5. Klanderman BJ
  6. Litonjua AA
  7. Lefebvre V
  8. Sparrow D
  9. Reilly JJ
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  11. Lomas DA
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  SOX5 is a candidate gene for chronic obstructive pulmonary disease susceptibility and is necessary for lung development.; American journal of respiratory and critical care medicine; Vol 183(11). 2011 Jun 1.
• 1. Bhattacharya S
  2. Tyagi S
  3. Srisuma S
  4. Demeo DL
  5. Shapiro SD
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  7. Silverman EK
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  Peripheral blood gene expression profiles in COPD subjects.; Journal of clinical bioinformatics; Vol 1(1). 2011.
• 1. Melén E
  2. Kho AT
  3. Sharma S
  4. Gaedigk R
  5. Leeder JS
  6. Mariani TJ
  7. Carey VJ
  8. Weiss ST
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  Expression analysis of asthma candidate genes during human and murine lung development.; Respiratory research; Vol 12. 2011.
• 1. Blake DJ
  2. Singh A
  3. Kombairaju P
  4. Malhotra D
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  6. Tuder RM
  7. Gabrielson E
  8. Biswal S
  Deletion of Keap1 in the lung attenuates acute cigarette smoke-induced oxidative stress and inflammation.; American journal of respiratory cell and molecular biology; Vol 42(5). 2010 May.
• 1. Srisuma S
  2. Bhattacharya S
  3. Simon DM
  4. Solleti SK
  5. Tyagi S
  6. Starcher B
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  Fibroblast growth factor receptors control epithelial-mesenchymal interactions necessary for alveolar elastogenesis.; American journal of respiratory and critical care medicine; Vol 181(8). 2010 Apr 15.
• 1. Sharma S
  2. Tantisira K
  3. Carey V
  4. Murphy AJ
  5. Lasky-Su J
  6. Celedón JC
  7. Lazarus R
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  A role for Wnt signaling genes in the pathogenesis of impaired lung function in asthma.; American journal of respiratory and critical care medicine; Vol 181(4). 2010 Feb 15.
• 1. Simon DM
  2. Tsai LW
  3. Ingenito EP
  4. Starcher BC
  5. Mariani TJ
  PPARgamma deficiency results in reduced lung elastic recoil and abnormalities in airspace distribution.; Respiratory research; Vol 11. 2010.
• 1. Kho AT
  2. Bhattacharya S
  3. Tantisira KG
  4. Carey VJ
  5. Gaedigk R
  6. Leeder JS
  7. Kohane IS
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  Transcriptomic analysis of human lung development.; American journal of respiratory and critical care medicine; Vol 181(1). 2010 Jan 1.
• 1. DeMeo DL
  2. Mariani T
  3. Bhattacharya S
  4. Srisuma S
  5. Lange C
  6. Litonjua A
  7. Bueno R
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  10. Sparrow D
  11. Shapiro SD
  12. Criner GJ
  13. Kim HP
  14. Chen Z
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  17. Silverman EK
  Integration of genomic and genetic approaches implicates IREB2 as a COPD susceptibility gene.; American journal of human genetics; Vol 85(4). 2009 Oct.
• 1. Bhattacharya S
  2. Mariani TJ
  Array of hope: expression profiling identifies disease biomarkers and mechanism.; Biochemical Society transactions; Vol 37(Pt 4). 2009 Aug.
• 1. Bhattacharya S
  2. Srisuma S
  3. Demeo DL
  4. Shapiro SD
  5. Bueno R
  6. Silverman EK
  7. Reilly JJ
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  Molecular biomarkers for quantitative and discrete COPD phenotypes.; American journal of respiratory cell and molecular biology; Vol 40(3). 2009 Mar.
• 1. Kho AT
  2. Bhattacharya S
  3. Mecham BH
  4. Hong J
  5. Kohane IS
  6. Mariani TJ
  Expression profiles of the mouse lung identify a molecular signature of time-to-birth.; American journal of respiratory cell and molecular biology; Vol 40(1). 2009 Jan.
• 1. Du R
  2. Tantisira K
  3. Carey V
  4. Bhattacharya S
  5. Metje S
  6. Kho AT
  7. Klanderman BJ
  8. Gaedigk R
  9. Lazarus R
  10. Mariani TJ
  11. Leeder JS
  12. Weiss ST
  Platform dependence of inference on gene-wise and gene-set involvement in human lung development.; BMC bioinformatics; Vol 10. 2009.
• 1. Planagumà A
  2. Kazani S
  3. Marigowda G
  4. Haworth O
  5. Mariani TJ
  6. Israel E
  7. Bleecker ER
  8. Curran-Everett D
  9. Erzurum SC
  10. Calhoun WJ
  11. Castro M
  12. Chung KF
  13. Gaston B
  14. Jarjour NN
  15. Busse WW
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  Airway lipoxin A4 generation and lipoxin A4 receptor expression are decreased in severe asthma.; American journal of respiratory and critical care medicine; Vol 178(6). 2008 Sep 15.
• 1. Reynolds SD
  2. Zemke AC
  3. Giangreco A
  4. Brockway BL
  5. Teisanu RM
  6. Drake JA
  7. Mariani T
  8. Di PY
  9. Taketo MM
  10. Stripp BR
  Conditional stabilization of beta-catenin expands the pool of lung stem cells.; Stem cells (Dayton, Ohio); Vol 26(5). 2008 May.