Recent Publications

• 1. Zhu M
  2. Mathews DH
  Sequence Design Using RNAstructure.; Methods in molecular biology (Clifton, N.J.); Vol 2847, pp. 17-31. 2025.
• 1. Reed CR
  2. Kennedy SD
  3. Horowitz RH
  4. Keedakkatt Puthenpeedikakkal AM
  5. Stern HA
  6. Mathews DH
  Modeling and NMR Data Elucidate the Structure of a G-Quadruplex-Ligand Interaction for a Pu22T-Cyclometalated Iridium(III) System.; The journal of physical chemistry. B. 2024 Nov 19.
• 1. Ajalik RE
  2. Linares I
  3. Alenchery RG
  4. Zhang VZ
  5. Wright TW
  6. Miller BL
  7. McGrath JL
  8. Awad HA
  Human Tendon-on-a-Chip for Modeling the Myofibroblast Microenvironment in Peritendinous Fibrosis.; Advanced healthcare materials. 2024 Nov 15.
• 1. Mittal A
  2. Ali SE
  3. Mathews DH
  Using the RNAstructure Software Package to Predict Conserved RNA Structures.; Current protocols; Vol 4(11), pp. e70054. 2024 Nov.
• 1. Kiliushik D
  2. Goenner C
  3. Law M
  4. Schroeder GM
  5. Srivastava Y
  6. Jenkins JL
  7. Wedekind JE
  Knotty is nice: metabolite binding and RNA-mediated gene regulation by the preQ1 riboswitch family.; The Journal of biological chemistry. 2024 Oct 30.
• 1. Courtney E
  2. Datta A
  3. Mathews DH
  4. Ward M
  memerna: Sparse RNA Folding Including Coaxial Stacking.; Journal of molecular biology. 2024 Oct 18.
• 1. Iannuzzelli JA
  2. Bonn R
  3. Hong AS
  4. Anitha AS
  5. Jenkins JL
  6. Wedekind JE
  7. Fasan R
  Cyclic peptides targeting the SARS-CoV-2 programmed ribosomal frameshifting RNA from a multiplexed phage display library.; Chemical science. 2024 Oct 17.
• 1. Srivastava Y
  2. Akinyemi O
  3. Rohe TC
  4. Pritchett EM
  5. Baker CD
  6. Sharma A
  7. Jenkins JL
  8. Mathews DH
  9. Wedekind JE
  Two riboswitch classes that share a common ligand-binding fold show major differences in the ability to accommodate mutations.; Nucleic acids research. 2024 Oct 16.
• 1. Zhu M
  2. Zuber J
  3. Tan Z
  4. Sharma G
  5. Mathews DH
  DecoyFinder: Identification of Contaminants in Sets of Homologous RNA Sequences.; bioRxiv : the preprint server for biology. 2024 Oct 15.
• 1. Poruthoor AJ
  2. Stallone JJ
  3. Miaro M
  4. Sharma A
  5. Grossfield A
  System size effects on the free energy landscapes from molecular dynamics of phase-separating bilayers.; The Journal of chemical physics; Vol 161(14). 2024 Oct 14.
• 1. Hecht F
  2. Zocchi M
  3. Tuttle ET
  4. Ward NP
  5. Smith B
  6. Kang YP
  7. Cazarin J
  8. Soares ZG
  9. Ozgurses ME
  10. Zhao H
  11. Sheehan C
  12. Alimohammadi F
  13. Munger LD
  14. Trivedi D
  15. Asantewaa G
  16. Blick-Nitko SK
  17. Zoeller JJ
  18. Chen Y
  19. Vasiliou V
  20. Turner BM
  21. Muir A
  22. Coloff JL
  23. Munger J
  24. DeNicola GM
  25. Harris IS
  Catabolism of extracellular glutathione supplies amino acids to support tumor growth.; bioRxiv : the preprint server for biology. 2024 Oct 11.
• 1. Maji D
  2. Jenkins JL
  3. Boutz PL
  4. Kielkopf CL
  Recurrent Neurodevelopmentally Associated Variants of the Pre-mRNA Splicing Factor U2AF2 Alter RNA Binding Affinities and Interactions.; Biochemistry. 2024 Oct 10.
• 1. Scales TQ
  2. Smith B
  3. Blanchard LM
  4. Wixom N
  5. Tuttle ET
  6. Altman BJ
  7. Peppone LJ
  8. Munger J
  9. Campbell TM
  10. Campbell EK
  11. Harris IS
  A whole food, plant-based diet reduces amino acid levels in patients with metastatic breast cancer.; medRxiv : the preprint server for health sciences. 2024 Oct 09.
• 1. Beard JW
  2. Hunt SL
  3. Evans A
  4. Goenner C
  5. Miller BL
  Mimicking a Cellular Crowding Environment for Enzyme-Free Paper-Based Nucleic Acid Tests at the Point of Care.; ACS sensors. 2024 Sep 30.
• 1. Oberstrass L
  2. Tants JN
  3. Lichtenthaeler C
  4. Ali SE
  5. Koch L
  6. Mathews DH
  7. Schlundt A
  8. Weigand J
  Comprehensive Profiling of Roquin Binding Preferences for RNA Stem-Loops.; Angewandte Chemie (International ed. in English). 2024 Sep 30.
• 1. Cosler LE
  2. Midence L
  3. Hayes JJ
  4. Gondeck JT
  5. Moy K
  6. Chen MH
  7. Hogan JD
  The Influence of State Restrictions on Opioid Prescribing: 2006-2018.; Journal of public health management and practice : JPHMP. 2024 Sep 24.
• 1. Ambeskovic A
  2. McCall MN
  3. Woodsmith J
  4. Juhl H
  5. Land H
  Exon Skipping-based Subtyping of Colorectal Cancers.; Gastroenterology. 2024 Aug 22.
• 1. Soto CA
  2. Lesch ML
  3. Becker JL
  4. Sharipol A
  5. Khan A
  6. Schafer XL
  7. Becker MW
  8. Munger JC
  9. Frisch BJ
  The Lactate Receptor GPR81 is a Mechanism of Leukemia-Associated Macrophage Polarization in the Bone Marrow Microenvironment.; bioRxiv : the preprint server for biology. 2024 Aug 16.
• 1. Blick-Nitko SK
  2. Ture SK
  3. Schafer XL
  4. Munger JC
  5. Livada AC
  6. Li C
  7. Maurya P
  8. Rondina MT
  9. Morrell CN
  Platelet Ido1 expression is induced during Plasmodium yoelii infection, altering plasma tryptophan metabolites.; Blood advances. 2024 Aug 12.
• 1. Casadio R
  2. Mathews DH
  3. Sternberg MJE
  Computational Resources for Molecular Biology 2024.; Journal of molecular biology. 2024 Aug 06.